Mateusz Pusz 55dece2226 docs: "Supported Systems Overview" chapter removed as not longer needed

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api_reference/src

docs: a large refactoring of TOC

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systems_reference

docs: broken links to some generated entities fixed

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api_reference.md

docs: a large refactoring of TOC

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bibliography.md

docs: a large refactoring of TOC

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cheat_sheet.md

docs: a large refactoring of TOC

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glossary.md

docs: a large refactoring of TOC

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